Unification of the folding mechanisms of non-two-state and two-state proteins

Kiyoto Kamagata, Munehito Arai, Kunihiro Kuwajima

研究成果: Article査読

80 被引用数 (Scopus)

抄録

We have collected the kinetic folding data for non-two-state and two-state globular proteins reported in the literature, and investigated the relationships between the folding kinetics and the native three-dimensional structure of these proteins. The rate constants of formation of both the intermediate and the native state of non-two-state folders were found to be significantly correlated with protein chain length and native backbone topology, which is represented by the absolute contact order and sequence-distant native pairs. The folding rate of two-state folders, which is known to be correlated with the native backbone topology, apparently does not correlate significantly with protein chain length. On the basis of a comparison of the folding rates of the non-two-state and two-state folders, it was found that they are similarly dependent on the parameters that reflect the native backbone topology. This suggests that the mechanisms behind non-two-state and two-state folding are essentially identical. The present results lead us to propose a unified mechanism of protein folding, in which folding occurs in a hierarchical manner, reflecting the hierarchy of the native three-dimensional structure, as embodied in the case of non-two-state folding with an accumulation of the intermediate. Apparently, two-state folding is merely a simplified version of hierarchical folding caused either by an alteration in the rate-limiting step of folding or by destabilization of the intermediate.

本文言語English
ページ(範囲)951-965
ページ数15
ジャーナルJournal of Molecular Biology
339
4
DOI
出版ステータスPublished - 2004 6 11
外部発表はい

ASJC Scopus subject areas

  • 構造生物学
  • 分子生物学

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