Identification of tumor suppressor candidate genes by physical and sequence mapping of the TSLC1 region of human chromosome 11q23

Mathew T. Pletcher, Takahiro Nobukuni, Hiroshi Fukuhara, Masami Kuramochi, Tomoko Maruyama, Takao Sekiya, Tom Sussan, Minoru Isomura, Yoshinori Murakami, Roger H. Reeves

研究成果: Article査読

16 被引用数 (Scopus)

抄録

Loss of heterozygosity for a locus on human chromosome 11q22-23 is observed at high frequency in non-small cell lung carcinoma (NSCLC). Introduction of a 1.1 Mb fragmented yeast artificial chromosome (YAC) mapping to this region completely suppresses the tumorigenic properties of a human NSCLC cell line, A549. Smaller fragmented YACs give partial but not complete suppression. To further localize the gene(s) responsible for this partial suppression, a bacterial artificial chromosome (BAC) and P1-based artificial chromosome (PAC) contig was constructed, completely spanning the candidate region. End sequence generated in the construction of the BAC/PAC contig identified a previously unmapped EST and served to order genomic sequence contigs from the publicly available Celera Genomics (CG) and Human Genome Project (HGP) efforts. Comparison showed that CG provided larger contigs, while HGP provided more coverage. Neither CG nor HGP provided complete sequence coverage, alone or in combination. The sequence was used to map 110 ESTs and to predict new genes, including two GenScan gene predictions that overlapped ESTs and were shown to be differentially expressed in tumorigenic and suppressed A549 cell lines.

本文言語English
ページ(範囲)181-189
ページ数9
ジャーナルGene
273
2
DOI
出版ステータスPublished - 2001 8 8
外部発表はい

ASJC Scopus subject areas

  • Genetics

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