Genomic Object Net: I. A platform for modelling and simulating biopathways.

Masao Nagasaki, Atsushi Doi, Hiroshi Matsuno, Satoru Miyano

研究成果: Article査読

85 被引用数 (Scopus)

抄録

Genomic Object Net (GON) 1.0 is a software package for creating models and simulations of biopathways. Its core architecture employs the notion of a hybrid functional Petri net with extension (HFPNe). HFPNe can seamlessly handle discrete and continuous objects and events while keeping the model components themselves simple. With the feature and graphical model editor, biopathways can be modelled intuitively and simulated on GON. The subsequent output of the simulation results can be evaluated in customised views on GON Visualizer by writing an XML file. Additionally, GON provides a tool to transform biopathway models in KEGG and BioCyc to the GON XML files for modelling and simulation. The tool avoids a lot of tedious work by users, enabling them to focus on the biological model.

本文言語English
ページ(範囲)181-184
ページ数4
ジャーナルApplied bioinformatics
2
3
出版ステータスPublished - 2003

ASJC Scopus subject areas

  • Information Systems
  • Agricultural and Biological Sciences(all)
  • Computer Science Applications

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