Color-coding reveals tandem repeats in the Escherichia coli genome

Tetsuhiko Yoshida, Nobuaki Obata, Kenji Oosawa

研究成果: Article査読

12 被引用数 (Scopus)

抄録

Genomic DNA contains a wide variety of repetitive sequences. In Escherichia coli, there have been several classes of repetitive sequences reported, some of which cluster as tandem repeats. We propose a novel method for analyzing symbolic sequences by two-dimensional pattern formation with color-coding. We applied this method for searching tandem repeats in the E. coli genome and found approximately 50 repeats with periods longer than 30 bases. The longest repeat has a period of 1267 bases. (C) 2000 Academic Press.

本文言語English
ページ(範囲)343-349
ページ数7
ジャーナルJournal of Molecular Biology
298
3
DOI
出版ステータスPublished - 2000 5 5
外部発表はい

ASJC Scopus subject areas

  • 構造生物学
  • 分子生物学

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