Solvation and Desolvation Dynamics in Apomyoglobin Folding Monitored by Time-resolved Infrared Spectroscopy

Shingo Nishiguchi, Yuji Goto, Satoshi Takahashi

Research output: Contribution to journalArticle

19 Citations (Scopus)

Abstract

Solvation and desolvation dynamics around helices during the kinetic folding process of apomyoglobin (apoMb) were investigated by using time-resolved infrared (IR) spectroscopy based on continuous-flow rapid mixing devices and an IR microscope. The folding of apoMb can be described by the collapse and search mechanism, in which the initial collapse occurring within several hundreds of microseconds is followed by the search for the correct secondary and tertiary structures. The time-resolved IR measurements showed a significant increase in solvated helix possessing a component of amide I' at 1633 cm-1 within 100 μs after initiating the folding by a pD jump from pD2.2 to 6.0. In contrast, there was a minor increase in buried helices having amide I' at 1652 cm-1 in this time domain. The observations demonstrate that the initially collapsed conformation of apoMb possesses a large amount of solvated helices, and suggest that much water is retained inside the collapsed domain. The contents of solvated and buried helices decrease and increase, respectively, in the time domain after the collapse, showing that the stepwise desolvation around helices is associated with the conformational search process. Interestingly, the largest changes in solvated and buried helices were observed at the final rate-limiting step of the apoMb folding. The persistence of the solvated helix until the final stage of apoMb folding suggests that the dissociation of hydrogen bonds between water and main-chain amides contributes to the energy barrier in the rate-determining step of the folding.

Original languageEnglish
Pages (from-to)491-502
Number of pages12
JournalJournal of Molecular Biology
Volume373
Issue number2
DOIs
Publication statusPublished - 2007 Oct 19
Externally publishedYes

Keywords

  • apomyoglobin
  • protein folding
  • rapid mixing
  • solvation
  • time-resolved infrared spectroscopy

ASJC Scopus subject areas

  • Structural Biology
  • Molecular Biology

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