PreDs: A server for predicting dsDNA-binding site on protein molecular surfaces

Yuko Tsuchiya, Kengo Kinoshita, Haruki Nakamura

Research output: Contribution to journalArticle

36 Citations (Scopus)

Abstract

Summary: PreDs is a WWW server that predicts the dsDNA-binding sites on protein molecular surfaces generated from the atomic coordinates in a PDB format. The prediction was done by evaluating the electrostatic potential, the local curvature and the global curvature on the surfaces. Results of the prediction can be interactively checked with our original surface viewer.

Original languageEnglish
Pages (from-to)1721-1723
Number of pages3
JournalBioinformatics
Volume21
Issue number8
DOIs
Publication statusPublished - 2005 Apr 15
Externally publishedYes

ASJC Scopus subject areas

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

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