PreDs: A server for predicting dsDNA-binding site on protein molecular surfaces

Yuko Tsuchiya; Kengo Kinoshita; Haruki Nakamura

doi:10.1093/bioinformatics/bti232

PreDs: A server for predicting dsDNA-binding site on protein molecular surfaces

Yuko Tsuchiya, Kengo Kinoshita, Haruki Nakamura

Research output: Contribution to journal › Article › peer-review

38 Citations (Scopus)

Abstract

Summary: PreDs is a WWW server that predicts the dsDNA-binding sites on protein molecular surfaces generated from the atomic coordinates in a PDB format. The prediction was done by evaluating the electrostatic potential, the local curvature and the global curvature on the surfaces. Results of the prediction can be interactively checked with our original surface viewer.

Original language	English
Pages (from-to)	1721-1723
Number of pages	3
Journal	Bioinformatics
Volume	21
Issue number	8
DOIs	https://doi.org/10.1093/bioinformatics/bti232
Publication status	Published - 2005 Apr 15
Externally published	Yes

ASJC Scopus subject areas

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

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10.1093/bioinformatics/bti232

Cite this

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title = "PreDs: A server for predicting dsDNA-binding site on protein molecular surfaces",

abstract = "Summary: PreDs is a WWW server that predicts the dsDNA-binding sites on protein molecular surfaces generated from the atomic coordinates in a PDB format. The prediction was done by evaluating the electrostatic potential, the local curvature and the global curvature on the surfaces. Results of the prediction can be interactively checked with our original surface viewer.",

author = "Yuko Tsuchiya and Kengo Kinoshita and Haruki Nakamura",

note = "Funding Information: This work was supported by a grant from the Ministry of Education, Culture, Sports, Science and Technology (MEXT) to K.K. and by a grant-in-aid from the Institute for Bioinformatics Research and Development, Japan Science and Technology Agency (BIRD-JST) to H.N.",

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doi = "10.1093/bioinformatics/bti232",

language = "English",

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T2 - A server for predicting dsDNA-binding site on protein molecular surfaces

AU - Tsuchiya, Yuko

AU - Kinoshita, Kengo

AU - Nakamura, Haruki

N1 - Funding Information: This work was supported by a grant from the Ministry of Education, Culture, Sports, Science and Technology (MEXT) to K.K. and by a grant-in-aid from the Institute for Bioinformatics Research and Development, Japan Science and Technology Agency (BIRD-JST) to H.N.

PY - 2005/4/15

Y1 - 2005/4/15

N2 - Summary: PreDs is a WWW server that predicts the dsDNA-binding sites on protein molecular surfaces generated from the atomic coordinates in a PDB format. The prediction was done by evaluating the electrostatic potential, the local curvature and the global curvature on the surfaces. Results of the prediction can be interactively checked with our original surface viewer.

AB - Summary: PreDs is a WWW server that predicts the dsDNA-binding sites on protein molecular surfaces generated from the atomic coordinates in a PDB format. The prediction was done by evaluating the electrostatic potential, the local curvature and the global curvature on the surfaces. Results of the prediction can be interactively checked with our original surface viewer.

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PreDs: A server for predicting dsDNA-binding site on protein molecular surfaces

Abstract

ASJC Scopus subject areas

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