On-line construction of compact directed acyclic word graphs

Shunsuke Inenaga, Hiromasa Hoshino, Ayumi Shinohara, Masayuki Takeda, Setsuo Arikawa, Giancarlo Mauri, Giulio Pavesi

Research output: Chapter in Book/Report/Conference proceedingConference contribution

21 Citations (Scopus)

Abstract

A Compact Directed Acyclic Word Graph (CDAWG) is a space-efficient text indexing structure, that can be used in several different string algorithms, especially in the analysis of biological sequences. In this paper, we present a new on-line algorithm for its construction, as well as the construction of a CDAWG for a set of strings.

Original languageEnglish
Title of host publicationCombinatorial Pattern Matching - 12th Annual Symposium, CPM 2001, Proceedings
EditorsAmihood Amir, Gad M. Landau, Gad M. Landau, Amihood Amir
PublisherSpringer-Verlag
Pages169-180
Number of pages12
ISBN (Print)3540422714, 9783540422716
Publication statusPublished - 2001 Jan 1
Externally publishedYes
Event12th Annual Symposium on Combinatorial Pattern Matching, CPM 2001 - Jerusalem, Israel
Duration: 2001 Jul 12001 Jul 4

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume2089
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Other

Other12th Annual Symposium on Combinatorial Pattern Matching, CPM 2001
CountryIsrael
CityJerusalem
Period01/7/101/7/4

ASJC Scopus subject areas

  • Theoretical Computer Science
  • Computer Science(all)

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  • Cite this

    Inenaga, S., Hoshino, H., Shinohara, A., Takeda, M., Arikawa, S., Mauri, G., & Pavesi, G. (2001). On-line construction of compact directed acyclic word graphs. In A. Amir, G. M. Landau, G. M. Landau, & A. Amir (Eds.), Combinatorial Pattern Matching - 12th Annual Symposium, CPM 2001, Proceedings (pp. 169-180). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 2089). Springer-Verlag.