Abstract
The evolution of land flora transformed the terrestrial environment. Land plants evolved from an ancestral charophycean alga from which they inherited developmental, biochemical, and cell biological attributes. Additional biochemical and physiological adaptations to land, and a life cycle with an alternation between multicellular haploid and diploid generations that facilitated efficient dispersal of desiccation tolerant spores, evolved in the ancestral land plant. We analyzed the genome of the liverwort Marchantia polymorpha, a member of a basal land plant lineage. Relative to charophycean algae, land plant genomes are characterized by genes encoding novel biochemical pathways, new phytohormone signaling pathways (notably auxin), expanded repertoires of signaling pathways, and increased diversity in some transcription factor families. Compared with other sequenced land plants, M. polymorpha exhibits low genetic redundancy in most regulatory pathways, with this portion of its genome resembling that predicted for the ancestral land plant. PaperClip [Formula presentes] The genome of the liverwort Marchantia polymorpha sheds light on the evolution of land plants.
| Original language | English |
|---|---|
| Pages (from-to) | 287-304.e15 |
| Journal | Cell |
| Volume | 171 |
| Issue number | 2 |
| DOIs | |
| Publication status | Published - 2017 Oct 5 |
Keywords
- Marchantia polymorpha
- auxin
- charophycean algae
- land plant evolution
- sex chromosome
ASJC Scopus subject areas
- Biochemistry, Genetics and Molecular Biology(all)
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Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. / Bowman, John L.; Kohchi, Takayuki; Yamato, Katsuyuki T.; Jenkins, Jerry; Shu, Shengqiang; Ishizaki, Kimitsune; Yamaoka, Shohei; Nishihama, Ryuichi; Nakamura, Yasukazu; Berger, Frédéric; Adam, Catherine; Aki, Shiori Sugamata; Althoff, Felix; Araki, Takashi; Arteaga-Vazquez, Mario A.; Balasubrmanian, Sureshkumar; Barry, Kerrie; Bauer, Diane; Boehm, Christian R.; Briginshaw, Liam; Caballero-Perez, Juan; Catarino, Bruno; Chen, Feng; Chiyoda, Shota; Chovatia, Mansi; Davies, Kevin M.; Delmans, Mihails; Demura, Taku; Dierschke, Tom; Dolan, Liam; Dorantes-Acosta, Ana E.; Eklund, D. Magnus; Florent, Stevie N.; Flores-Sandoval, Eduardo; Fujiyama, Asao; Fukuzawa, Hideya; Galik, Bence; Grimanelli, Daniel; Grimwood, Jane; Grossniklaus, Ueli; Hamada, Takahiro; Haseloff, Jim; Hetherington, Alexander J.; Higo, Asuka; Hirakawa, Yuki; Hundley, Hope N.; Ikeda, Yoko; Inoue, Keisuke; Inoue, Shin ichiro; Ishida, Sakiko; Jia, Qidong; Kakita, Mitsuru; Kanazawa, Takehiko; Kawai, Yosuke; Kawashima, Tomokazu; Kennedy, Megan; Kinose, Keita; Kinoshita, Toshinori; Kohara, Yuji; Koide, Eri; Komatsu, Kenji; Kopischke, Sarah; Kubo, Minoru; Kyozuka, Junko; Lagercrantz, Ulf; Lin, Shih Shun; Lindquist, Erika; Lipzen, Anna M.; Lu, Chia Wei; De Luna, Efraín; Martienssen, Robert A.; Minamino, Naoki; Mizutani, Masaharu; Mizutani, Miya; Mochizuki, Nobuyoshi; Monte, Isabel; Mosher, Rebecca; Nagasaki, Hideki; Nakagami, Hirofumi; Naramoto, Satoshi; Nishitani, Kazuhiko; Ohtani, Misato; Okamoto, Takashi; Okumura, Masaki; Phillips, Jeremy; Pollak, Bernardo; Reinders, Anke; Rövekamp, Moritz; Sano, Ryosuke; Sawa, Shinichiro; Schmid, Marc W.; Shirakawa, Makoto; Solano, Roberto; Spunde, Alexander; Suetsugu, Noriyuki; Sugano, Sumio; Sugiyama, Akifumi; Sun, Rui; Suzuki, Yutaka; Takenaka, Mizuki; Takezawa, Daisuke; Tomogane, Hirokazu; Tsuzuki, Masayuki; Ueda, Takashi; Umeda, Masaaki; Ward, John M.; Watanabe, Yuichiro; Yazaki, Kazufumi; Yokoyama, Ryusuke; Yoshitake, Yoshihiro; Yotsui, Izumi; Zachgo, Sabine; Schmutz, Jeremy.
In: Cell, Vol. 171, No. 2, 05.10.2017, p. 287-304.e15.Research output: Contribution to journal › Article › peer-review
}
TY - JOUR
T1 - Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome
AU - Bowman, John L.
AU - Kohchi, Takayuki
AU - Yamato, Katsuyuki T.
AU - Jenkins, Jerry
AU - Shu, Shengqiang
AU - Ishizaki, Kimitsune
AU - Yamaoka, Shohei
AU - Nishihama, Ryuichi
AU - Nakamura, Yasukazu
AU - Berger, Frédéric
AU - Adam, Catherine
AU - Aki, Shiori Sugamata
AU - Althoff, Felix
AU - Araki, Takashi
AU - Arteaga-Vazquez, Mario A.
AU - Balasubrmanian, Sureshkumar
AU - Barry, Kerrie
AU - Bauer, Diane
AU - Boehm, Christian R.
AU - Briginshaw, Liam
AU - Caballero-Perez, Juan
AU - Catarino, Bruno
AU - Chen, Feng
AU - Chiyoda, Shota
AU - Chovatia, Mansi
AU - Davies, Kevin M.
AU - Delmans, Mihails
AU - Demura, Taku
AU - Dierschke, Tom
AU - Dolan, Liam
AU - Dorantes-Acosta, Ana E.
AU - Eklund, D. Magnus
AU - Florent, Stevie N.
AU - Flores-Sandoval, Eduardo
AU - Fujiyama, Asao
AU - Fukuzawa, Hideya
AU - Galik, Bence
AU - Grimanelli, Daniel
AU - Grimwood, Jane
AU - Grossniklaus, Ueli
AU - Hamada, Takahiro
AU - Haseloff, Jim
AU - Hetherington, Alexander J.
AU - Higo, Asuka
AU - Hirakawa, Yuki
AU - Hundley, Hope N.
AU - Ikeda, Yoko
AU - Inoue, Keisuke
AU - Inoue, Shin ichiro
AU - Ishida, Sakiko
AU - Jia, Qidong
AU - Kakita, Mitsuru
AU - Kanazawa, Takehiko
AU - Kawai, Yosuke
AU - Kawashima, Tomokazu
AU - Kennedy, Megan
AU - Kinose, Keita
AU - Kinoshita, Toshinori
AU - Kohara, Yuji
AU - Koide, Eri
AU - Komatsu, Kenji
AU - Kopischke, Sarah
AU - Kubo, Minoru
AU - Kyozuka, Junko
AU - Lagercrantz, Ulf
AU - Lin, Shih Shun
AU - Lindquist, Erika
AU - Lipzen, Anna M.
AU - Lu, Chia Wei
AU - De Luna, Efraín
AU - Martienssen, Robert A.
AU - Minamino, Naoki
AU - Mizutani, Masaharu
AU - Mizutani, Miya
AU - Mochizuki, Nobuyoshi
AU - Monte, Isabel
AU - Mosher, Rebecca
AU - Nagasaki, Hideki
AU - Nakagami, Hirofumi
AU - Naramoto, Satoshi
AU - Nishitani, Kazuhiko
AU - Ohtani, Misato
AU - Okamoto, Takashi
AU - Okumura, Masaki
AU - Phillips, Jeremy
AU - Pollak, Bernardo
AU - Reinders, Anke
AU - Rövekamp, Moritz
AU - Sano, Ryosuke
AU - Sawa, Shinichiro
AU - Schmid, Marc W.
AU - Shirakawa, Makoto
AU - Solano, Roberto
AU - Spunde, Alexander
AU - Suetsugu, Noriyuki
AU - Sugano, Sumio
AU - Sugiyama, Akifumi
AU - Sun, Rui
AU - Suzuki, Yutaka
AU - Takenaka, Mizuki
AU - Takezawa, Daisuke
AU - Tomogane, Hirokazu
AU - Tsuzuki, Masayuki
AU - Ueda, Takashi
AU - Umeda, Masaaki
AU - Ward, John M.
AU - Watanabe, Yuichiro
AU - Yazaki, Kazufumi
AU - Yokoyama, Ryusuke
AU - Yoshitake, Yoshihiro
AU - Yotsui, Izumi
AU - Zachgo, Sabine
AU - Schmutz, Jeremy
N1 - Funding Information: The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. Funding from ARC FF0561326 , DP130100177 , DP160100892 (J.L.B), MEXT KAKENHI Grant Numbers ( 15K21758 , 16H06279 , 25113001 , 25113009 [T. Kohchi], 22112514 , 24112715 , 24510272 [K.T.Y.], 15H04391 , 15H01233 , 17H06472 [K. Ishizaki], FWF grant P28320-B21 (F.B.), SNF grant 310030B_160336 (U.G.), Gates Cambridge Trust (C.R.B.), Program to Disseminate Tenure Tracking System , MEXT, Japan (Y.I.), the Marsden Fund of New Zealand grant PAF1302 (K.D.), UC MEXUS Collaborative program grant 2011-UCMEXUS-19941-44-OAC7 (M.A.A.-V, X.C., and E.D.L.), Consejo Nacional de Ciencia y Tecnología (CONACYT) grant CB-158550 (M.A.A.-V.), COSEAMX1 JEAI EPIMAIZE , Universidad Veracruzana (M.A.A.-V. and D.G.), CONACYT grant CB-158561 (A.E.D.A.), Newton Fund grant RG79985 (M.A.A.-V. and J.H.), and Universidad Veracruzana - Cuerpo Académico CA-UVER-234 , Marie Sklodowska-Curie action ( #658900 ) (D.G.) is acknowledged. We thank Sandra K. Floyd for DNA and RNA isolation; David Powell, Kathryn Hodgins, and Xuemei Chen for bioinformatics assistance; and Kanako Takeda, Manami Miyazaki, Takumi Kondoh, Yuiri Sowa, Yuma Hibi, Ryo Hirai, Motoyoshi Nakamura, Jun Inoue, Tatsuya Hasegawa, Mihoko Kobayashi, Kyoko Miyashita, and Taisuke Togawa for isolation of X-linked markers. We apologize to those researchers whose works we consulted but were unable to cite due to lack of space. Publisher Copyright: © 2017 The Author(s)
PY - 2017/10/5
Y1 - 2017/10/5
N2 - The evolution of land flora transformed the terrestrial environment. Land plants evolved from an ancestral charophycean alga from which they inherited developmental, biochemical, and cell biological attributes. Additional biochemical and physiological adaptations to land, and a life cycle with an alternation between multicellular haploid and diploid generations that facilitated efficient dispersal of desiccation tolerant spores, evolved in the ancestral land plant. We analyzed the genome of the liverwort Marchantia polymorpha, a member of a basal land plant lineage. Relative to charophycean algae, land plant genomes are characterized by genes encoding novel biochemical pathways, new phytohormone signaling pathways (notably auxin), expanded repertoires of signaling pathways, and increased diversity in some transcription factor families. Compared with other sequenced land plants, M. polymorpha exhibits low genetic redundancy in most regulatory pathways, with this portion of its genome resembling that predicted for the ancestral land plant. PaperClip [Formula presentes] The genome of the liverwort Marchantia polymorpha sheds light on the evolution of land plants.
AB - The evolution of land flora transformed the terrestrial environment. Land plants evolved from an ancestral charophycean alga from which they inherited developmental, biochemical, and cell biological attributes. Additional biochemical and physiological adaptations to land, and a life cycle with an alternation between multicellular haploid and diploid generations that facilitated efficient dispersal of desiccation tolerant spores, evolved in the ancestral land plant. We analyzed the genome of the liverwort Marchantia polymorpha, a member of a basal land plant lineage. Relative to charophycean algae, land plant genomes are characterized by genes encoding novel biochemical pathways, new phytohormone signaling pathways (notably auxin), expanded repertoires of signaling pathways, and increased diversity in some transcription factor families. Compared with other sequenced land plants, M. polymorpha exhibits low genetic redundancy in most regulatory pathways, with this portion of its genome resembling that predicted for the ancestral land plant. PaperClip [Formula presentes] The genome of the liverwort Marchantia polymorpha sheds light on the evolution of land plants.
KW - Marchantia polymorpha
KW - auxin
KW - charophycean algae
KW - land plant evolution
KW - sex chromosome
UR - http://www.scopus.com/inward/record.url?scp=85030527411&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85030527411&partnerID=8YFLogxK
U2 - 10.1016/j.cell.2017.09.030
DO - 10.1016/j.cell.2017.09.030
M3 - Article
C2 - 28985561
AN - SCOPUS:85030527411
VL - 171
SP - 287-304.e15
JO - Cell
JF - Cell
SN - 0092-8674
IS - 2
ER -