Inferring strings from graphs and arrays

Hideo Bannai, Shunsuke Inenaga, Ayumi Shinohara, Masayuki Takeda

Research output: Contribution to journalArticlepeer-review

44 Citations (Scopus)

Abstract

This paper introduces a new problem of inferring strings from graphs, and inferring strings from arrays. Given a graph G or an array A, we infer a string that suits the graph, or the array, under some condition. Firstly, we solve the problem of finding a string w such that the directed acyclic subsequence graph (DASG) of w is isomorphic to a given graph G. Secondly, we consider directed acyclic word graphs (DAWGs) in terms of string inference. Finally, we consider the problem of finding a string w of a minimal size alphabet, such that the suffix array (SA) of w is identical to a given permutation p = p 1, . . . , p n of integers 1, . . . , n. Each of our three algorithms solving the above problems runs in linear time with respect to the input size.

Original languageEnglish
Pages (from-to)208-217
Number of pages10
JournalLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume2747
Publication statusPublished - 2003 Dec 1
Externally publishedYes

ASJC Scopus subject areas

  • Theoretical Computer Science
  • Computer Science(all)

Fingerprint Dive into the research topics of 'Inferring strings from graphs and arrays'. Together they form a unique fingerprint.

Cite this