Genomic Object Net: II. Modelling biopathways by hybrid functional Petri net with extension.

Atsushi Doi; Masao Nagasaki; Sachie Fujita; Hiroshi Matsuno; Satoru Miyano

Genomic Object Net: II. Modelling biopathways by hybrid functional Petri net with extension.

Atsushi Doi, Masao Nagasaki, Sachie Fujita, Hiroshi Matsuno, Satoru Miyano

Tohoku Medical Megabank Organization (ToMMo)

Research output: Contribution to journal › Article › peer-review

23 Citations (Scopus)

Abstract

This paper demonstrates how to create an HFPNe (hybrid functional Petri net with extension) model, using the lac operon gene regulatory mechanism and glycolytic pathway as an example. Using this example, readers can then model other biopathways of interest. Simulations of the HFPNe model were performed using the software package Genomic Object Net.

Original language	English
Pages (from-to)	185-188
Number of pages	4
Journal	Applied bioinformatics
Volume	2
Issue number	3
Publication status	Published - 2003

ASJC Scopus subject areas

Information Systems
Agricultural and Biological Sciences(all)
Computer Science Applications

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title = "Genomic Object Net: II. Modelling biopathways by hybrid functional Petri net with extension.",

abstract = "This paper demonstrates how to create an HFPNe (hybrid functional Petri net with extension) model, using the lac operon gene regulatory mechanism and glycolytic pathway as an example. Using this example, readers can then model other biopathways of interest. Simulations of the HFPNe model were performed using the software package Genomic Object Net.",

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AU - Miyano, Satoru

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Genomic Object Net: II. Modelling biopathways by hybrid functional Petri net with extension.

Abstract

ASJC Scopus subject areas

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