Genomic Object Net: II. Modelling biopathways by hybrid functional Petri net with extension.

Atsushi Doi, Masao Nagasaki, Sachie Fujita, Hiroshi Matsuno, Satoru Miyano

Research output: Contribution to journalArticlepeer-review

23 Citations (Scopus)

Abstract

This paper demonstrates how to create an HFPNe (hybrid functional Petri net with extension) model, using the lac operon gene regulatory mechanism and glycolytic pathway as an example. Using this example, readers can then model other biopathways of interest. Simulations of the HFPNe model were performed using the software package Genomic Object Net.

Original languageEnglish
Pages (from-to)185-188
Number of pages4
JournalApplied bioinformatics
Volume2
Issue number3
Publication statusPublished - 2003

ASJC Scopus subject areas

  • Information Systems
  • Agricultural and Biological Sciences(all)
  • Computer Science Applications

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