Nuclear-Biomass hybrid system which takes waste biomass from municipal, agricultural area, and forest as feedstock produces Bio-diesel fuel from synthesis gas generated by endothermic pyrolytic gasification using high temperature nuclear heat. Over 900 degree Celsius of exterior thermal heat from nuclear reactors, Very High Temperature Reactor (VHTR) and some other heat sources, bring about waste biomass gasification to produce maximum amount of chemical energy from feedstock. Hydrogen from Biomass gasification or Bio-diesel as the product of Fischer-Tropsch reaction following it provide fuels for transport sector. Nuclear-Biomass hybrid system is a new alternatives to produce more energy generating synergy effects by efficiently utilizing the high temperature heat from nuclear reactor that might be considerably wasted by thermal cycle, and also energy loss from biomass combustion or biochemical processes. System Dynamics approach is taken to analyze low-carbon synthesis fuel, Bio-diesel, production with combination of carbon monoxide and hydrogen from biomass gasification. Feedstock cost considering collection, transportation, storage and facility for biomass gasification impacts the economic feasibility of this model. This paper provides the implication of practical nuclear-biomass hybrid system application with feedstock supply chain through evaluation of economic feasibility.