Discovery of aberrant expression of R-RAS by cancer-linked DNA hypomethylation in gastric cancer using microarrays

Michiko Nishigaki, Kazuhiko Aoyagi, Inaho Danjoh, Masahide Fukaya, Kazuyoshi Yanagihara, Hiromi Sakamoto, Teruhiko Yoshida, Hiroki Sasaki

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121 Citations (Scopus)

Abstract

Although hypomethylation was the originally identified epigenetic change in cancer, it was overlooked for many years in preference to hypermethylation. Recently, gene activation by cancer-linked hypomethylation has been rediscovered. However, in gastric cancer, genome-wide screening of the activated genes has not been found. By using microarrays, we identified 1,383 gene candidates reactivated in at least one cell line of eight gastric cancer cell lines after treatment with 5-aza-2′ deoxycytidine and trichostatin A. Of the 1,383 genes, 159 genes, including oncogenes ELK1, FRAT2, R-RAS, RHOB, and RHO6, were further selected as gene candidates that are silenced by DNA methylation in normal stomach mucosa but are activated by DNA demethylation in a subset of gastric cancers. Next, we showed that demethylation of specific CpG sites within the first intron of R-RAS causes activation in more than half of gastric cancers. Introduction of siRNA into R-RAS-expressing cells resulted in the disappearance of the adhered cells, suggesting that functional blocking of the R-RAS-signaling pathway has great potential for gastric cancer therapy. Our extensive gene list provides other candidates for this class of oncogene.

Original languageEnglish
Pages (from-to)2115-2124
Number of pages10
JournalCancer Research
Volume65
Issue number6
DOIs
Publication statusPublished - 2005 Mar 15
Externally publishedYes

ASJC Scopus subject areas

  • Oncology
  • Cancer Research

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    Nishigaki, M., Aoyagi, K., Danjoh, I., Fukaya, M., Yanagihara, K., Sakamoto, H., Yoshida, T., & Sasaki, H. (2005). Discovery of aberrant expression of R-RAS by cancer-linked DNA hypomethylation in gastric cancer using microarrays. Cancer Research, 65(6), 2115-2124. https://doi.org/10.1158/0008-5472.CAN-04-3340