Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection

Mostafa Abdelrahman, Mai Mitoma, Takao Ikeuchi, Mitsutaka Mori, Kyoko Murakami, Yukio Ozaki, Masaru Matsumoto, Atsuko Uragami, Akira Kanno

Research output: Contribution to journalArticlepeer-review

3 Citations (Scopus)

Abstract

This data article reports de novo transcriptome analysis of resistant wild Asparagus kiusianus and susceptible A. officinalis plants 24 and 48 h post-inoculation (24 and 48 hpi) with Phomopsis asparagi. Differential gene expression (DGE) analysis demonstrated that several genes involved in secondary metabolites and plant-pathogen interactions are up-regulated in resistant wild A. kiusianus relative to susceptible A. officinalis. The assembled contig sequences generated in this study were used to search single nucleotide polymorphism (SNP) and insertion/deletion (InDel) distribution in A. kiusianus and A. officinalis plants. SNP and InDel data developed from this transcriptome analysis will be used to generate a high-density linkage map to facilitate further development of molecular marker-assisted selection in A. officinalis.

Original languageEnglish
Pages (from-to)2117-2121
Number of pages5
JournalData in Brief
Volume21
DOIs
Publication statusPublished - 2018 Dec
Externally publishedYes

Keywords

  • Asparagus
  • Insertion/deletion
  • RNA-Seq
  • Single nucleotide polymorphism
  • Transcriptome

ASJC Scopus subject areas

  • General

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