CSO validator: Improving manual curation workow for biological pathways

Euna Jeong; Masao Nagasaki; Emi Ikeda; Yayoi Sekiya; Ayumu Saito; Satoru Miyano

doi:10.1093/bioinformatics/btr395

CSO validator: Improving manual curation workow for biological pathways

Euna Jeong, Masao Nagasaki, Emi Ikeda, Yayoi Sekiya, Ayumu Saito, Satoru Miyano

Tohoku Medical Megabank Organization (ToMMo)

Research output: Contribution to journal › Article › peer-review

2 Citations (Scopus)

Abstract

Manual curation and validation of large-scale biological pathways are required to obtain high-quality pathway databases. In a typical curation process, model validation and model update based on appropriate feedback are repeated and requires considerable cooperation of scientists. We have developed a CSO (Cell System Ontology) validator to reduce the repetition and time during the curation process. This tool assists in quickly obtaining agreement among curators and domain experts and in providing a consistent and accurate pathway database.

Original language	English
Article number	btr395
Pages (from-to)	2471-2472
Number of pages	2
Journal	Bioinformatics
Volume	27
Issue number	17
DOIs	https://doi.org/10.1093/bioinformatics/btr395
Publication status	Published - 2011 Sep

ASJC Scopus subject areas

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

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AU - Saito, Ayumu

AU - Miyano, Satoru

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