Crystal structure of metallo DNA duplex containing consecutive watson-crick-like T-HgII-T base pairs

Jiro Kondo, Tom Yamada, Chika Hirose, Itaru Okamoto, Yoshiyuki Tanaka, Akira Ono

Research output: Contribution to journalArticlepeer-review

95 Citations (Scopus)

Abstract

The metallo DNA duplex containing mercury-mediated T-T base pairs is an attractive biomacromolecular nanomaterial which can be applied to nanodevices such as ion sensors. Reported herein is the first crystal structure of a B-form DNA duplex containing two consecutive T-HgII-T base pairs. The HgII ion occupies the center between two T residues. The N3-Hg II bond distance is 2.0 Å. The relatively short Hg II-HgII distance (3.3 Å) observed in consecutive T-HgII-T base pairs suggests that the metallophilic attraction could exist between them and may stabilize the B-form double helix. To support this, the DNA duplex is largely distorted and adopts an unusual nonhelical conformation in the absence of HgII. The structure of the metallo DNA duplex itself and the HgII-induced structural switching from the nonhelical form to the B-form provide the basis for structure-based design of metal-conjugated nucleic acid nanomaterials. Paired up: The first crystal structure of a metallo DNA duplex containing consecutive Watson-Crick-like T-HgII-T base pairs has been solved. The structure itself and the HgII-induced structural switching from a nonhelical form to the B-form provide the basis for structure-based design of metal-conjugated nucleic acid nanomaterials.

Original languageEnglish
Pages (from-to)2385-2388
Number of pages4
JournalAngewandte Chemie - International Edition
Volume53
Issue number9
DOIs
Publication statusPublished - 2014 Feb 24

Keywords

  • DNA
  • helical structures
  • mercury
  • metalation
  • structure elucidation

ASJC Scopus subject areas

  • Catalysis
  • Chemistry(all)

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