COXPRESdb in 2015: Coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems

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96 Citations (Scopus)

Abstract

The COXPRESdb (http://coxpresdb.jp) provides gene coexpression relationships for animal species. Here, we report the updates of the database, mainly focusing on the following two points. For the first point, we added RNAseq-based gene coexpression data for three species (human, mouse and fly), and largely increased the number of microarray experiments to nine species. The increase of the number of expression data with multiple platforms could enhance the reliability of coexpression data. For the second point, we refined the data assessment procedures, for each coexpressed gene list and for the total performance of a platform. The assessment of coexpressed gene list now uses more reasonable Pvalues derived from platform-specific null distribution. These developments greatly reduced pseudopredictions for directly associated genes, thus expanding the reliability of coexpression data to design new experiments and to discuss experimental results.

Original languageEnglish
Pages (from-to)D82-D86
JournalNucleic acids research
Volume43
Issue numberD1
DOIs
Publication statusPublished - 2015 Jan 28

ASJC Scopus subject areas

  • Genetics

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