Complete genome sequence of cyanobacterium Fischerella sp. NIES-3754, providing thermoresistant optogenetic tools

Yuu Hirose; Takatomo Fujisawa; Yoshiyuki Ohtsubo; Mitsunori Katayama; Naomi Misawa; Sachiko Wakazuki; Yohei Shimura; Yasukazu Nakamura; Masanobu Kawachi; Hirofumi Yoshikawa; Toshihiko Eki; Yu Kanesaki

doi:10.1016/j.jbiotec.2016.01.011

Complete genome sequence of cyanobacterium Fischerella sp. NIES-3754, providing thermoresistant optogenetic tools

Yuu Hirose, Takatomo Fujisawa, Yoshiyuki Ohtsubo, Mitsunori Katayama, Naomi Misawa, Sachiko Wakazuki, Yohei Shimura, Yasukazu Nakamura, Masanobu Kawachi, Hirofumi Yoshikawa, Toshihiko Eki, Yu Kanesaki

Research output: Contribution to journal › Article › peer-review

17 Citations (Scopus)

Abstract

Cyanobacterial phytochrome-class photosensors are recently emerging optogenetic tools. We isolated Fischerella sp. strain NIES-3754 from hotspring at Suwa-shrine, Suwa, Nagano, Japan. We determined complete genome sequence of the NIES-3754 strain, which is composed of one chromosome and two putative replicons (total 5,826,863. bp containing no gaps). We identified photosensor genes of 5 phytochromes and 9 cyanobacteriochromes, which will facilitate optogenetics of thermophile.

Original language	English
Pages (from-to)	45-46
Number of pages	2
Journal	Journal of Biotechnology
Volume	220
DOIs	https://doi.org/10.1016/j.jbiotec.2016.01.011
Publication status	Published - 2016 Feb 20
Externally published	Yes

Keywords

Cyanobacteria
Genome
Photosensor
Thermophile

ASJC Scopus subject areas

Biotechnology
Bioengineering
Applied Microbiology and Biotechnology

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10.1016/j.jbiotec.2016.01.011

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title = "Complete genome sequence of cyanobacterium Fischerella sp. NIES-3754, providing thermoresistant optogenetic tools",

abstract = "Cyanobacterial phytochrome-class photosensors are recently emerging optogenetic tools. We isolated Fischerella sp. strain NIES-3754 from hotspring at Suwa-shrine, Suwa, Nagano, Japan. We determined complete genome sequence of the NIES-3754 strain, which is composed of one chromosome and two putative replicons (total 5,826,863. bp containing no gaps). We identified photosensor genes of 5 phytochromes and 9 cyanobacteriochromes, which will facilitate optogenetics of thermophile.",

keywords = "Cyanobacteria, Genome, Photosensor, Thermophile",

author = "Yuu Hirose and Takatomo Fujisawa and Yoshiyuki Ohtsubo and Mitsunori Katayama and Naomi Misawa and Sachiko Wakazuki and Yohei Shimura and Yasukazu Nakamura and Masanobu Kawachi and Hirofumi Yoshikawa and Toshihiko Eki and Yu Kanesaki",

note = "Funding Information: We are grateful to Dr. Yoshiyuki Sakaki, Dr. Masahira Hattori, Dr. Makoto Ishida, Dr. Yo Kikuchi, Dr. Kan Tanaka, Dr. Mitsumasa Hanaoka and Dr. Masahiko Ikeuchi for encouraging this work. This work was supported by a Grant-in-Aid for Young Scientists (B) (number 25830130 ) from the Japan Society for the Promotion of Science (to Y.H.) and NODAI Genome Research Center. Publisher Copyright: {\textcopyright} 2016 Elsevier B.V.",

year = "2016",

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day = "20",

doi = "10.1016/j.jbiotec.2016.01.011",

language = "English",

volume = "220",

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T1 - Complete genome sequence of cyanobacterium Fischerella sp. NIES-3754, providing thermoresistant optogenetic tools

AU - Hirose, Yuu

AU - Fujisawa, Takatomo

AU - Ohtsubo, Yoshiyuki

AU - Katayama, Mitsunori

AU - Misawa, Naomi

AU - Wakazuki, Sachiko

AU - Shimura, Yohei

AU - Nakamura, Yasukazu

AU - Kawachi, Masanobu

AU - Yoshikawa, Hirofumi

AU - Eki, Toshihiko

AU - Kanesaki, Yu

N1 - Funding Information: We are grateful to Dr. Yoshiyuki Sakaki, Dr. Masahira Hattori, Dr. Makoto Ishida, Dr. Yo Kikuchi, Dr. Kan Tanaka, Dr. Mitsumasa Hanaoka and Dr. Masahiko Ikeuchi for encouraging this work. This work was supported by a Grant-in-Aid for Young Scientists (B) (number 25830130 ) from the Japan Society for the Promotion of Science (to Y.H.) and NODAI Genome Research Center. Publisher Copyright: © 2016 Elsevier B.V.

PY - 2016/2/20

Y1 - 2016/2/20

N2 - Cyanobacterial phytochrome-class photosensors are recently emerging optogenetic tools. We isolated Fischerella sp. strain NIES-3754 from hotspring at Suwa-shrine, Suwa, Nagano, Japan. We determined complete genome sequence of the NIES-3754 strain, which is composed of one chromosome and two putative replicons (total 5,826,863. bp containing no gaps). We identified photosensor genes of 5 phytochromes and 9 cyanobacteriochromes, which will facilitate optogenetics of thermophile.

AB - Cyanobacterial phytochrome-class photosensors are recently emerging optogenetic tools. We isolated Fischerella sp. strain NIES-3754 from hotspring at Suwa-shrine, Suwa, Nagano, Japan. We determined complete genome sequence of the NIES-3754 strain, which is composed of one chromosome and two putative replicons (total 5,826,863. bp containing no gaps). We identified photosensor genes of 5 phytochromes and 9 cyanobacteriochromes, which will facilitate optogenetics of thermophile.

KW - Cyanobacteria

KW - Genome

KW - Photosensor

KW - Thermophile

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JO - Journal of Biotechnology

JF - Journal of Biotechnology

ER -

Complete genome sequence of cyanobacterium Fischerella sp. NIES-3754, providing thermoresistant optogenetic tools

Abstract

Keywords

ASJC Scopus subject areas

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