A new dynamical domain decomposition method for parallel molecular dynamics simulation

V. Zhakhovskii, K. Nishihara, Y. Fukuda, S. Shimojo, T. Akiyama, S. Miyanaga, H. Sone, H. Kobayashi, E. Ito, Y. Seo, M. Tamura, Y. Ueshima

Research output: Chapter in Book/Report/Conference proceedingConference contribution

25 Citations (Scopus)

Abstract

A new material particle dynamical domain decomposition method M P D 3 has been developed. The method is suitable for a large scale parallel molecular dynamic simulation on a heterogeneous computing net. Performance of the M P D3 algorithm is tested in various computing environments, such as PC clusters, super computer clusters, and Grid. It is shown that the M P D3 algorithm is highly adaptive for both computer clusters and Grid computing environments, even if other programs are running on the same computer environment.

Original languageEnglish
Title of host publication2005 IEEE International Symposium on Cluster Computing and the Grid, CCGrid 2005
Pages848-854
Number of pages7
DOIs
Publication statusPublished - 2005
Event2005 IEEE International Symposium on Cluster Computing and the Grid, CCGrid 2005 - Cardiff, Wales, United Kingdom
Duration: 2005 May 92005 May 12

Publication series

Name2005 IEEE International Symposium on Cluster Computing and the Grid, CCGrid 2005
Volume2

Other

Other2005 IEEE International Symposium on Cluster Computing and the Grid, CCGrid 2005
Country/TerritoryUnited Kingdom
CityCardiff, Wales
Period05/5/905/5/12

ASJC Scopus subject areas

  • Engineering(all)

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