A model ecosystem of twelve cryopreservable microbial species allowing for a non-invasive approach

Kazufumi Hosoda; Shigeto Seno; Naomi Murakami; Hideo Matsuda; Yutaka Osada; Michio Kondoh

doi:10.1101/2020.10.23.351742

A model ecosystem of twelve cryopreservable microbial species allowing for a non-invasive approach

Kazufumi Hosoda, Shigeto Seno, Naomi Murakami, Hideo Matsuda, Yutaka Osada, Michio Kondoh

LIF - Ecological Developmental Adaptability Life Sciences

Research output: Contribution to journal › Article › peer-review

Abstract

We developed a synthetic ecosystem of 12 cryopreservable microbial species with diverse interactions as an experimental “model ecosystem.” We created a machine learning model that noninvasively distinguished the 12 species on micrographs enabling high-throughput measurements. Our synthetic ecosystems maintained a certain diversity for at least six months.

Original language	English
Journal	Unknown Journal
DOIs	https://doi.org/10.1101/2020.10.23.351742
Publication status	Published - 2020 Oct 23

Keywords

Experimental model ecosystem
Machine learning
Microbial microcosm
Synthetic ecosystem

ASJC Scopus subject areas

Biochemistry, Genetics and Molecular Biology(all)
Agricultural and Biological Sciences(all)
Immunology and Microbiology(all)
Neuroscience(all)
Pharmacology, Toxicology and Pharmaceutics(all)

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10.1101/2020.10.23.351742

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AU - Osada, Yutaka

AU - Kondoh, Michio

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