A fast order-preserving matching with q-neighborhood filtration using SIMD instructions

Yohei Ueki, Kazuyuki Narisawa, Ayumi Shinohara

Research output: Contribution to journalConference articlepeer-review

1 Citation (Scopus)

Abstract

The order-preserving matching problem is a variant of the pattern matching problem focusing on shapes of sequences instead of values of sequences. Given a text and a pattern, the problem is to output all positions where the pattern and a subsequence in the text are of the same relative order. Chhabra and Tarhio proposed a fast algorithm based on filtration for the order-preserving matching problem, and Faro and Külekci improved Chhabra and Tarhio's solution by extending the filter. Furthermore, Cantone et al. and Chhabra et al. proposed solutions based on filtration using SIMD (Single Instruction Multiple Data) instructions, and showed that SIMD instructions are efficient in speeding up their algorithms. In this paper, we propose a fast matching algorithm for the order-preserving matching problem using SIMD instructions based on filtration proposed by Faro and Külekci. We show that our algorithm is practically faster than previous solutions.

Original languageEnglish
Pages (from-to)108-115
Number of pages8
JournalCEUR Workshop Proceedings
Volume1548
Publication statusPublished - 2016
EventStudent Research Forum Papers and Posters at SOFSEM 2016, SOFSEM-SP 2016 - Harrachov, Czech Republic
Duration: 2016 Jan 232016 Jan 28

Keywords

  • Order-preserving matching problem
  • Pattern matching problem
  • SIMD instructions

ASJC Scopus subject areas

  • Computer Science(all)

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