A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map

Taku Oshima; Hiroji Aiba; Tomoya Baba; Katsutoshi Fujita; Kouji Hayashi; Atsuko Honjo; Keiichi Ikemoto; Toshifumi Inada; Takeshi Itoh; Miwako Kajihara; Kiyotaka Kanai; Kaoru Kashimoto; Sigenobu Kimura; Masanari Kitagawa; Kozo Makino; Shinji Masuda; Takeyoshi Miki; Kiyoshi Mizobuchi; Hirotada Mori; Kouji Motomura; Yoshikazu Nakamura; Hiroko Nashimoto; Yoshitaka Nishio; Noriko Saito; Gen Ichi Sampei; Yasushi Seki; Hideaki Tagami; Keiko Takemoto; Chieko Wada; Yoshihiro Yamamoto; Minoru Yano; Takashi Horiuchi

doi:10.1093/dnares/3.3.137

A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map

Taku Oshima, Hiroji Aiba, Tomoya Baba, Katsutoshi Fujita, Kouji Hayashi, Atsuko Honjo, Keiichi Ikemoto, Toshifumi Inada, Takeshi Itoh, Miwako Kajihara, Kiyotaka Kanai, Kaoru Kashimoto, Sigenobu Kimura, Masanari Kitagawa, Kozo Makino, Shinji Masuda, Takeyoshi Miki, Kiyoshi Mizobuchi, Hirotada Mori, Kouji MotomuraYoshikazu Nakamura, Hiroko Nashimoto, Yoshitaka Nishio, Noriko Saito, Gen Ichi Sampei, Yasushi Seki, Hideaki Tagami, Keiko Takemoto, Chieko Wada, Yoshihiro Yamamoto, Minoru Yano, Takashi Horiuchi

Research output: Contribution to journal › Article

50 Citations (Scopus)

Abstract

The 718,122 base pair sequence of the Escherichia coli K-12 genome corresponding to the region from 12.7 to 28.0 minutes on the genetic map is described. This region contains at least 681 potential open reading frames, of which 277 (41%) have been previously identified, 147 (22%) are homologous to other known genes, 139 (20%) are identical or similar to the hypothetical genes registered in databases, and the remaining 118 (17%) do not show a significant similarity to any other gene. In this region, we assigned a cluster of cit genes encoding multienzyme citrate lyase, two clusters of fimbrial genes and a set of lysogenic phage genes encoding integrase, excisionase and repressor in the e14 genetic element. In addition, a new valine tRNA gene, designated valZ, and a family of long directly repeated sequences, LDR-A, -B and -C, were found.

Original language	English
Pages (from-to)	137-155
Number of pages	19
Journal	DNA Research
Volume	3
Issue number	3
DOIs	https://doi.org/10.1093/dnares/3.3.137
Publication status	Published - 1996 Jan 1
Externally published	Yes

Keywords

Escherichia coli K12
Genome sequence
ORF analysis

ASJC Scopus subject areas

Molecular Biology
Genetics

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10.1093/dnares/3.3.137

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Oshima, T., Aiba, H., Baba, T., Fujita, K., Hayashi, K., Honjo, A., Ikemoto, K., Inada, T., Itoh, T., Kajihara, M., Kanai, K., Kashimoto, K., Kimura, S., Kitagawa, M., Makino, K., Masuda, S., Miki, T., Mizobuchi, K., Mori, H., ... Horiuchi, T. (1996). A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map. DNA Research, 3(3), 137-155. https://doi.org/10.1093/dnares/3.3.137

A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map. / Oshima, Taku; Aiba, Hiroji; Baba, Tomoya; Fujita, Katsutoshi; Hayashi, Kouji; Honjo, Atsuko; Ikemoto, Keiichi; Inada, Toshifumi; Itoh, Takeshi; Kajihara, Miwako; Kanai, Kiyotaka; Kashimoto, Kaoru; Kimura, Sigenobu; Kitagawa, Masanari; Makino, Kozo; Masuda, Shinji; Miki, Takeyoshi; Mizobuchi, Kiyoshi; Mori, Hirotada; Motomura, Kouji; Nakamura, Yoshikazu; Nashimoto, Hiroko; Nishio, Yoshitaka; Saito, Noriko; Sampei, Gen Ichi; Seki, Yasushi; Tagami, Hideaki; Takemoto, Keiko; Wada, Chieko; Yamamoto, Yoshihiro; Yano, Minoru; Horiuchi, Takashi.

In: DNA Research, Vol. 3, No. 3, 01.01.1996, p. 137-155.

Research output: Contribution to journal › Article

Oshima, T, Aiba, H, Baba, T, Fujita, K, Hayashi, K, Honjo, A, Ikemoto, K, Inada, T, Itoh, T, Kajihara, M, Kanai, K, Kashimoto, K, Kimura, S, Kitagawa, M, Makino, K, Masuda, S, Miki, T, Mizobuchi, K, Mori, H, Motomura, K, Nakamura, Y, Nashimoto, H, Nishio, Y, Saito, N, Sampei, GI, Seki, Y, Tagami, H, Takemoto, K, Wada, C, Yamamoto, Y, Yano, M & Horiuchi, T 1996, 'A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map', DNA Research, vol. 3, no. 3, pp. 137-155. https://doi.org/10.1093/dnares/3.3.137

Oshima, Taku ; Aiba, Hiroji ; Baba, Tomoya ; Fujita, Katsutoshi ; Hayashi, Kouji ; Honjo, Atsuko ; Ikemoto, Keiichi ; Inada, Toshifumi ; Itoh, Takeshi ; Kajihara, Miwako ; Kanai, Kiyotaka ; Kashimoto, Kaoru ; Kimura, Sigenobu ; Kitagawa, Masanari ; Makino, Kozo ; Masuda, Shinji ; Miki, Takeyoshi ; Mizobuchi, Kiyoshi ; Mori, Hirotada ; Motomura, Kouji ; Nakamura, Yoshikazu ; Nashimoto, Hiroko ; Nishio, Yoshitaka ; Saito, Noriko ; Sampei, Gen Ichi ; Seki, Yasushi ; Tagami, Hideaki ; Takemoto, Keiko ; Wada, Chieko ; Yamamoto, Yoshihiro ; Yano, Minoru ; Horiuchi, Takashi. / A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map. In: DNA Research. 1996 ; Vol. 3, No. 3. pp. 137-155.

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abstract = "The 718,122 base pair sequence of the Escherichia coli K-12 genome corresponding to the region from 12.7 to 28.0 minutes on the genetic map is described. This region contains at least 681 potential open reading frames, of which 277 (41%) have been previously identified, 147 (22%) are homologous to other known genes, 139 (20%) are identical or similar to the hypothetical genes registered in databases, and the remaining 118 (17%) do not show a significant similarity to any other gene. In this region, we assigned a cluster of cit genes encoding multienzyme citrate lyase, two clusters of fimbrial genes and a set of lysogenic phage genes encoding integrase, excisionase and repressor in the e14 genetic element. In addition, a new valine tRNA gene, designated valZ, and a family of long directly repeated sequences, LDR-A, -B and -C, were found.",

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AU - Aiba, Hiroji

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AU - Fujita, Katsutoshi

AU - Hayashi, Kouji

AU - Honjo, Atsuko

AU - Ikemoto, Keiichi

AU - Inada, Toshifumi

AU - Itoh, Takeshi

AU - Kajihara, Miwako

AU - Kanai, Kiyotaka

AU - Kashimoto, Kaoru

AU - Kimura, Sigenobu

AU - Kitagawa, Masanari

AU - Makino, Kozo

AU - Masuda, Shinji

AU - Miki, Takeyoshi

AU - Mizobuchi, Kiyoshi

AU - Mori, Hirotada

AU - Motomura, Kouji

AU - Nakamura, Yoshikazu

AU - Nashimoto, Hiroko

AU - Nishio, Yoshitaka

AU - Saito, Noriko

AU - Sampei, Gen Ichi

AU - Seki, Yasushi

AU - Tagami, Hideaki

AU - Takemoto, Keiko

AU - Wada, Chieko

AU - Yamamoto, Yoshihiro

AU - Yano, Minoru

AU - Horiuchi, Takashi

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